GrippeCanadaV3, Main, Exploration, bibRecord, 000198

Long-term surveillance of H7 influenza viruses in American wild aquatic birds: are the H7N3 influenza viruses in wild birds the precursors of highly pathogenic strains in domestic poultry?

Identifieur interne : 000198 ( Main/Exploration ); précédent : 000197; suivant : 000199

Long-term surveillance of H7 influenza viruses in American wild aquatic birds: are the H7N3 influenza viruses in wild birds the precursors of highly pathogenic strains in domestic poultry?

Auteurs : Scott Krauss [États-Unis] ; Karla M. Stucker [États-Unis] ; Seth A. Schobel [États-Unis] ; Angela Danner [États-Unis] ; Kimberly Friedman [États-Unis] ; James P. Knowles [États-Unis] ; Ghazi Kayali [États-Unis] ; Lawrence J. Niles [États-Unis] ; Amanda D. Dey [États-Unis] ; Garnet Raven [Canada] ; Paul Pryor [Canada] ; Xudong Lin [États-Unis] ; Suman R. Das [États-Unis] ; Timothy B. Stockwell [États-Unis] ; David E. Wentworth [États-Unis] ; Robert G. Webster [États-Unis]

Source :

Emerging microbes & infections [ 2222-1751 ] ; 2015.

RBID : pubmed:26954883

Descripteurs français

KwdFr :
- Alberta (épidémiologie), Analyse de séquence d'ADN, Animaux, Animaux domestiques, Animaux sauvages, Anseriformes, Canards, Charadriiformes, Delaware (épidémiologie), Flambées de maladies (médecine vétérinaire), Grippe chez les oiseaux (épidémiologie), Humains, Maladies de la volaille (épidémiologie), Maladies des oiseaux (épidémiologie), Oiseaux, Phylogénie, Sous-type H7N3 du virus de la grippe A (génétique), Sous-type H7N3 du virus de la grippe A (isolement et purification), Épidémiosurveillance.
MESH :
- génétique : Sous-type H7N3 du virus de la grippe A.
- isolement et purification : Sous-type H7N3 du virus de la grippe A.
- médecine vétérinaire : Flambées de maladies.
- épidémiologie : Alberta, Delaware, Grippe chez les oiseaux, Maladies de la volaille, Maladies des oiseaux.
- Analyse de séquence d'ADN, Animaux, Animaux domestiques, Animaux sauvages, Anseriformes, Canards, Charadriiformes, Humains, Oiseaux, Phylogénie, Épidémiosurveillance.

English descriptors

KwdEn :
- Alberta (epidemiology), Animals, Animals, Domestic, Animals, Wild, Anseriformes, Bird Diseases (epidemiology), Birds, Charadriiformes, Delaware (epidemiology), Disease Outbreaks (veterinary), Ducks, Epidemiological Monitoring, Humans, Influenza A Virus, H7N3 Subtype (genetics), Influenza A Virus, H7N3 Subtype (isolation & purification), Influenza in Birds (epidemiology), Phylogeny, Poultry Diseases (epidemiology), Sequence Analysis, DNA.
MESH :
- epidemiology : Alberta, Bird Diseases, Delaware, Influenza in Birds, Poultry Diseases.
- genetics : Influenza A Virus, H7N3 Subtype.
- isolation & purification : Influenza A Virus, H7N3 Subtype.
- veterinary : Disease Outbreaks.
- Animals, Animals, Domestic, Animals, Wild, Anseriformes, Birds, Charadriiformes, Ducks, Epidemiological Monitoring, Humans, Phylogeny, Sequence Analysis, DNA.

Abstract

The emergence of influenza A virus (IAV) in domestic avian species and associated transmissions to mammals is unpredictable. In the Americas, the H7 IAVs are of particular concern, and there have been four separate outbreaks of highly pathogenic (HP) H7N3 in domestic poultry in North and South America between 2002 and 2012, with occasional spillover into humans. Here, we use long-term IAV surveillance in North American shorebirds at Delaware Bay, USA, from 1985 to 2012 and in ducks in Alberta, Canada, from 1976 to 2012 to determine which hemagglutinin (HA)-neuraminidase (NA) combinations predominated in Anseriformes (ducks) and Charadriiformes (shorebirds) and whether there is concordance between peaks of H7 prevalence and transmission in wild aquatic birds and the emergence of H7 IAVs in poultry and humans. Whole-genome sequencing supported phylogenetic and genomic constellation analyses to determine whether HP IAVs emerge in the context of specific internal gene segment sequences. Phylogenetic analysis of whole-genome sequences of the H7N3 influenza viruses from wild birds and HP H7N3 outbreaks in the Americas indicate that each HP outbreak was an independent emergence event and that the low pathogenic (LP) avian influenza precursors were most likely from dabbling ducks. The different polybasic cleavage sites in the four HP outbreaks support independent origins. At the 95% nucleotide percent identity-level phylogenetic analysis showed that the wild duck HA, PB1, and M sequences clustered with the poultry and human outbreak sequences. The genomic constellation analysis strongly suggests that gene segments/virus flow from wild birds to domestic poultry.

DOI: 10.1038/emi.2015.35
PubMed: 26954883

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000233
to stream Main, to step Curation: 000233

Le document en format XML

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<author><name sortKey="Niles, Lawrence J" sort="Niles, Lawrence J" uniqKey="Niles L" first="Lawrence J" last="Niles">Lawrence J. Niles</name>
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<author><name sortKey="Dey, Amanda D" sort="Dey, Amanda D" uniqKey="Dey A" first="Amanda D" last="Dey">Amanda D. Dey</name>
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<author><name sortKey="Raven, Garnet" sort="Raven, Garnet" uniqKey="Raven G" first="Garnet" last="Raven">Garnet Raven</name>
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<author><name sortKey="Pryor, Paul" sort="Pryor, Paul" uniqKey="Pryor P" first="Paul" last="Pryor">Paul Pryor</name>
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<wicri:noRegion>AB</wicri:noRegion>
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</author>
<author><name sortKey="Lin, Xudong" sort="Lin, Xudong" uniqKey="Lin X" first="Xudong" last="Lin">Xudong Lin</name>
<affiliation wicri:level="2"><nlm:affiliation>J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>J. Craig Venter Institute (JCVI), Rockville, MD 20850</wicri:regionArea>
<placeName><region type="state">Maryland</region>
</placeName>
</affiliation>
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<author><name sortKey="Das, Suman R" sort="Das, Suman R" uniqKey="Das S" first="Suman R" last="Das">Suman R. Das</name>
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<placeName><region type="state">Maryland</region>
</placeName>
</affiliation>
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<author><name sortKey="Stockwell, Timothy B" sort="Stockwell, Timothy B" uniqKey="Stockwell T" first="Timothy B" last="Stockwell">Timothy B. Stockwell</name>
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</placeName>
</affiliation>
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<author><name sortKey="Wentworth, David E" sort="Wentworth, David E" uniqKey="Wentworth D" first="David E" last="Wentworth">David E. Wentworth</name>
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<country xml:lang="fr">États-Unis</country>
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</placeName>
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<author><name sortKey="Webster, Robert G" sort="Webster, Robert G" uniqKey="Webster R" first="Robert G" last="Webster">Robert G. Webster</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Long-term surveillance of H7 influenza viruses in American wild aquatic birds: are the H7N3 influenza viruses in wild birds the precursors of highly pathogenic strains in domestic poultry?</title>
<author><name sortKey="Krauss, Scott" sort="Krauss, Scott" uniqKey="Krauss S" first="Scott" last="Krauss">Scott Krauss</name>
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<country xml:lang="fr">États-Unis</country>
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<placeName><region type="state">Tennessee</region>
</placeName>
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<author><name sortKey="Stucker, Karla M" sort="Stucker, Karla M" uniqKey="Stucker K" first="Karla M" last="Stucker">Karla M. Stucker</name>
<affiliation wicri:level="2"><nlm:affiliation>J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
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<author><name sortKey="Schobel, Seth A" sort="Schobel, Seth A" uniqKey="Schobel S" first="Seth A" last="Schobel">Seth A. Schobel</name>
<affiliation wicri:level="2"><nlm:affiliation>J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>J. Craig Venter Institute (JCVI), Rockville, MD 20850</wicri:regionArea>
<placeName><region type="state">Maryland</region>
</placeName>
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<affiliation wicri:level="4"><nlm:affiliation>Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742</wicri:regionArea>
<placeName><region type="state">Maryland</region>
<settlement type="city">College Park (Maryland)</settlement>
</placeName>
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<author><name sortKey="Danner, Angela" sort="Danner, Angela" uniqKey="Danner A" first="Angela" last="Danner">Angela Danner</name>
<affiliation wicri:level="2"><nlm:affiliation>St. Jude Children's Research Hospital, Department of Infectious Diseases, Memphis, TN 38105, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
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<placeName><region type="state">Tennessee</region>
</placeName>
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<author><name sortKey="Friedman, Kimberly" sort="Friedman, Kimberly" uniqKey="Friedman K" first="Kimberly" last="Friedman">Kimberly Friedman</name>
<affiliation wicri:level="2"><nlm:affiliation>St. Jude Children's Research Hospital, Department of Infectious Diseases, Memphis, TN 38105, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>St. Jude Children's Research Hospital, Department of Infectious Diseases, Memphis, TN 38105</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
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<author><name sortKey="Knowles, James P" sort="Knowles, James P" uniqKey="Knowles J" first="James P" last="Knowles">James P. Knowles</name>
<affiliation wicri:level="2"><nlm:affiliation>St. Jude Children's Research Hospital, Department of Infectious Diseases, Memphis, TN 38105, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>St. Jude Children's Research Hospital, Department of Infectious Diseases, Memphis, TN 38105</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Kayali, Ghazi" sort="Kayali, Ghazi" uniqKey="Kayali G" first="Ghazi" last="Kayali">Ghazi Kayali</name>
<affiliation wicri:level="2"><nlm:affiliation>St. Jude Children's Research Hospital, Department of Infectious Diseases, Memphis, TN 38105, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>St. Jude Children's Research Hospital, Department of Infectious Diseases, Memphis, TN 38105</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Niles, Lawrence J" sort="Niles, Lawrence J" uniqKey="Niles L" first="Lawrence J" last="Niles">Lawrence J. Niles</name>
<affiliation wicri:level="2"><nlm:affiliation>Conserve Wildlife Foundation of New Jersey, Bordentown, NJ 08505, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Conserve Wildlife Foundation of New Jersey, Bordentown, NJ 08505</wicri:regionArea>
<placeName><region type="state">New Jersey</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Dey, Amanda D" sort="Dey, Amanda D" uniqKey="Dey A" first="Amanda D" last="Dey">Amanda D. Dey</name>
<affiliation wicri:level="2"><nlm:affiliation>Endangered and Nongame Species, New Jersey Division of Fish and Wildlife, Trenton, NJ 08332, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Endangered and Nongame Species, New Jersey Division of Fish and Wildlife, Trenton, NJ 08332</wicri:regionArea>
<placeName><region type="state">New Jersey</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Raven, Garnet" sort="Raven, Garnet" uniqKey="Raven G" first="Garnet" last="Raven">Garnet Raven</name>
<affiliation wicri:level="1"><nlm:affiliation>Environment Canada, Canadian Wildlife Service, Edmonton T6B 1K5, AB, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Environment Canada, Canadian Wildlife Service, Edmonton T6B 1K5, AB</wicri:regionArea>
<wicri:noRegion>AB</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Pryor, Paul" sort="Pryor, Paul" uniqKey="Pryor P" first="Paul" last="Pryor">Paul Pryor</name>
<affiliation wicri:level="1"><nlm:affiliation>Environment Canada, Canadian Wildlife Service, Edmonton T6B 1K5, AB, Canada.</nlm:affiliation>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Environment Canada, Canadian Wildlife Service, Edmonton T6B 1K5, AB</wicri:regionArea>
<wicri:noRegion>AB</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Lin, Xudong" sort="Lin, Xudong" uniqKey="Lin X" first="Xudong" last="Lin">Xudong Lin</name>
<affiliation wicri:level="2"><nlm:affiliation>J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>J. Craig Venter Institute (JCVI), Rockville, MD 20850</wicri:regionArea>
<placeName><region type="state">Maryland</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Das, Suman R" sort="Das, Suman R" uniqKey="Das S" first="Suman R" last="Das">Suman R. Das</name>
<affiliation wicri:level="2"><nlm:affiliation>J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>J. Craig Venter Institute (JCVI), Rockville, MD 20850</wicri:regionArea>
<placeName><region type="state">Maryland</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Stockwell, Timothy B" sort="Stockwell, Timothy B" uniqKey="Stockwell T" first="Timothy B" last="Stockwell">Timothy B. Stockwell</name>
<affiliation wicri:level="2"><nlm:affiliation>J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>J. Craig Venter Institute (JCVI), Rockville, MD 20850</wicri:regionArea>
<placeName><region type="state">Maryland</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Wentworth, David E" sort="Wentworth, David E" uniqKey="Wentworth D" first="David E" last="Wentworth">David E. Wentworth</name>
<affiliation wicri:level="2"><nlm:affiliation>J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>J. Craig Venter Institute (JCVI), Rockville, MD 20850</wicri:regionArea>
<placeName><region type="state">Maryland</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Webster, Robert G" sort="Webster, Robert G" uniqKey="Webster R" first="Robert G" last="Webster">Robert G. Webster</name>
<affiliation wicri:level="2"><nlm:affiliation>St. Jude Children's Research Hospital, Department of Infectious Diseases, Memphis, TN 38105, USA.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>St. Jude Children's Research Hospital, Department of Infectious Diseases, Memphis, TN 38105</wicri:regionArea>
<placeName><region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">Emerging microbes & infections</title>
<idno type="eISSN">2222-1751</idno>
<imprint><date when="2015" type="published">2015</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alberta (epidemiology)</term>
<term>Animals</term>
<term>Animals, Domestic</term>
<term>Animals, Wild</term>
<term>Anseriformes</term>
<term>Bird Diseases (epidemiology)</term>
<term>Birds</term>
<term>Charadriiformes</term>
<term>Delaware (epidemiology)</term>
<term>Disease Outbreaks (veterinary)</term>
<term>Ducks</term>
<term>Epidemiological Monitoring</term>
<term>Humans</term>
<term>Influenza A Virus, H7N3 Subtype (genetics)</term>
<term>Influenza A Virus, H7N3 Subtype (isolation & purification)</term>
<term>Influenza in Birds (epidemiology)</term>
<term>Phylogeny</term>
<term>Poultry Diseases (epidemiology)</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Alberta (épidémiologie)</term>
<term>Analyse de séquence d'ADN</term>
<term>Animaux</term>
<term>Animaux domestiques</term>
<term>Animaux sauvages</term>
<term>Anseriformes</term>
<term>Canards</term>
<term>Charadriiformes</term>
<term>Delaware (épidémiologie)</term>
<term>Flambées de maladies (médecine vétérinaire)</term>
<term>Grippe chez les oiseaux (épidémiologie)</term>
<term>Humains</term>
<term>Maladies de la volaille (épidémiologie)</term>
<term>Maladies des oiseaux (épidémiologie)</term>
<term>Oiseaux</term>
<term>Phylogénie</term>
<term>Sous-type H7N3 du virus de la grippe A (génétique)</term>
<term>Sous-type H7N3 du virus de la grippe A (isolement et purification)</term>
<term>Épidémiosurveillance</term>
</keywords>
<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Alberta</term>
<term>Bird Diseases</term>
<term>Delaware</term>
<term>Influenza in Birds</term>
<term>Poultry Diseases</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A Virus, H7N3 Subtype</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Sous-type H7N3 du virus de la grippe A</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Influenza A Virus, H7N3 Subtype</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Sous-type H7N3 du virus de la grippe A</term>
</keywords>
<keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Flambées de maladies</term>
</keywords>
<keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Disease Outbreaks</term>
</keywords>
<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Alberta</term>
<term>Delaware</term>
<term>Grippe chez les oiseaux</term>
<term>Maladies de la volaille</term>
<term>Maladies des oiseaux</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Animals, Domestic</term>
<term>Animals, Wild</term>
<term>Anseriformes</term>
<term>Birds</term>
<term>Charadriiformes</term>
<term>Ducks</term>
<term>Epidemiological Monitoring</term>
<term>Humans</term>
<term>Phylogeny</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Animaux</term>
<term>Animaux domestiques</term>
<term>Animaux sauvages</term>
<term>Anseriformes</term>
<term>Canards</term>
<term>Charadriiformes</term>
<term>Humains</term>
<term>Oiseaux</term>
<term>Phylogénie</term>
<term>Épidémiosurveillance</term>
</keywords>
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<front><div type="abstract" xml:lang="en">The emergence of influenza A virus (IAV) in domestic avian species and associated transmissions to mammals is unpredictable. In the Americas, the H7 IAVs are of particular concern, and there have been four separate outbreaks of highly pathogenic (HP) H7N3 in domestic poultry in North and South America between 2002 and 2012, with occasional spillover into humans. Here, we use long-term IAV surveillance in North American shorebirds at Delaware Bay, USA, from 1985 to 2012 and in ducks in Alberta, Canada, from 1976 to 2012 to determine which hemagglutinin (HA)-neuraminidase (NA) combinations predominated in Anseriformes (ducks) and Charadriiformes (shorebirds) and whether there is concordance between peaks of H7 prevalence and transmission in wild aquatic birds and the emergence of H7 IAVs in poultry and humans. Whole-genome sequencing supported phylogenetic and genomic constellation analyses to determine whether HP IAVs emerge in the context of specific internal gene segment sequences. Phylogenetic analysis of whole-genome sequences of the H7N3 influenza viruses from wild birds and HP H7N3 outbreaks in the Americas indicate that each HP outbreak was an independent emergence event and that the low pathogenic (LP) avian influenza precursors were most likely from dabbling ducks. The different polybasic cleavage sites in the four HP outbreaks support independent origins. At the 95% nucleotide percent identity-level phylogenetic analysis showed that the wild duck HA, PB1, and M sequences clustered with the poultry and human outbreak sequences. The genomic constellation analysis strongly suggests that gene segments/virus flow from wild birds to domestic poultry.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26954883</PMID>
<DateCompleted><Year>2017</Year>
<Month>04</Month>
<Day>19</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2222-1751</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>4</Volume>
<PubDate><Year>2015</Year>
<Month>Jun</Month>
<Day>17</Day>
</PubDate>
</JournalIssue>
<Title>Emerging microbes & infections</Title>
<ISOAbbreviation>Emerg Microbes Infect</ISOAbbreviation>
</Journal>
<ArticleTitle>Long-term surveillance of H7 influenza viruses in American wild aquatic birds: are the H7N3 influenza viruses in wild birds the precursors of highly pathogenic strains in domestic poultry?</ArticleTitle>
<Pagination><MedlinePgn>e35</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1038/emi.2015.35</ELocationID>
<Abstract><AbstractText>The emergence of influenza A virus (IAV) in domestic avian species and associated transmissions to mammals is unpredictable. In the Americas, the H7 IAVs are of particular concern, and there have been four separate outbreaks of highly pathogenic (HP) H7N3 in domestic poultry in North and South America between 2002 and 2012, with occasional spillover into humans. Here, we use long-term IAV surveillance in North American shorebirds at Delaware Bay, USA, from 1985 to 2012 and in ducks in Alberta, Canada, from 1976 to 2012 to determine which hemagglutinin (HA)-neuraminidase (NA) combinations predominated in Anseriformes (ducks) and Charadriiformes (shorebirds) and whether there is concordance between peaks of H7 prevalence and transmission in wild aquatic birds and the emergence of H7 IAVs in poultry and humans. Whole-genome sequencing supported phylogenetic and genomic constellation analyses to determine whether HP IAVs emerge in the context of specific internal gene segment sequences. Phylogenetic analysis of whole-genome sequences of the H7N3 influenza viruses from wild birds and HP H7N3 outbreaks in the Americas indicate that each HP outbreak was an independent emergence event and that the low pathogenic (LP) avian influenza precursors were most likely from dabbling ducks. The different polybasic cleavage sites in the four HP outbreaks support independent origins. At the 95% nucleotide percent identity-level phylogenetic analysis showed that the wild duck HA, PB1, and M sequences clustered with the poultry and human outbreak sequences. The genomic constellation analysis strongly suggests that gene segments/virus flow from wild birds to domestic poultry.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Krauss</LastName>
<ForeName>Scott</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>St. Jude Children's Research Hospital, Department of Infectious Diseases, Memphis, TN 38105, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Stucker</LastName>
<ForeName>Karla M</ForeName>
<Initials>KM</Initials>
<AffiliationInfo><Affiliation>J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Schobel</LastName>
<ForeName>Seth A</ForeName>
<Initials>SA</Initials>
<AffiliationInfo><Affiliation>J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Center for Bioinformatics and Computational Biology, University of Maryland, College Park, MD 20742, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Danner</LastName>
<ForeName>Angela</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>St. Jude Children's Research Hospital, Department of Infectious Diseases, Memphis, TN 38105, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Friedman</LastName>
<ForeName>Kimberly</ForeName>
<Initials>K</Initials>
<AffiliationInfo><Affiliation>St. Jude Children's Research Hospital, Department of Infectious Diseases, Memphis, TN 38105, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Knowles</LastName>
<ForeName>James P</ForeName>
<Initials>JP</Initials>
<AffiliationInfo><Affiliation>St. Jude Children's Research Hospital, Department of Infectious Diseases, Memphis, TN 38105, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Kayali</LastName>
<ForeName>Ghazi</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>St. Jude Children's Research Hospital, Department of Infectious Diseases, Memphis, TN 38105, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Niles</LastName>
<ForeName>Lawrence J</ForeName>
<Initials>LJ</Initials>
<AffiliationInfo><Affiliation>Conserve Wildlife Foundation of New Jersey, Bordentown, NJ 08505, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Dey</LastName>
<ForeName>Amanda D</ForeName>
<Initials>AD</Initials>
<AffiliationInfo><Affiliation>Endangered and Nongame Species, New Jersey Division of Fish and Wildlife, Trenton, NJ 08332, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Raven</LastName>
<ForeName>Garnet</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>Environment Canada, Canadian Wildlife Service, Edmonton T6B 1K5, AB, Canada.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Pryor</LastName>
<ForeName>Paul</ForeName>
<Initials>P</Initials>
<AffiliationInfo><Affiliation>Environment Canada, Canadian Wildlife Service, Edmonton T6B 1K5, AB, Canada.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Lin</LastName>
<ForeName>Xudong</ForeName>
<Initials>X</Initials>
<AffiliationInfo><Affiliation>J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Das</LastName>
<ForeName>Suman R</ForeName>
<Initials>SR</Initials>
<AffiliationInfo><Affiliation>J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Stockwell</LastName>
<ForeName>Timothy B</ForeName>
<Initials>TB</Initials>
<AffiliationInfo><Affiliation>J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wentworth</LastName>
<ForeName>David E</ForeName>
<Initials>DE</Initials>
<AffiliationInfo><Affiliation>J. Craig Venter Institute (JCVI), Rockville, MD 20850, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Webster</LastName>
<ForeName>Robert G</ForeName>
<Initials>RG</Initials>
<AffiliationInfo><Affiliation>St. Jude Children's Research Hospital, Department of Infectious Diseases, Memphis, TN 38105, USA.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y"><Grant><GrantID>HHSN272200900007C</GrantID>
<Agency>PHS HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant><GrantID>U19 AI110819</GrantID>
<Acronym>AI</Acronym>
<Agency>NIAID NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant><GrantID>HHSN272200900007C</GrantID>
<Acronym>AI</Acronym>
<Agency>NIAID NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant><GrantID>HHSN2720140006C</GrantID>
<Agency>PHS HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant><GrantID>HHSN266200700005C</GrantID>
<Acronym>AI</Acronym>
<Agency>NIAID NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant><GrantID>HHSN266200700005C</GrantID>
<Agency>PHS HHS</Agency>
<Country>United States</Country>
</Grant>
</GrantList>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D052061">Research Support, N.I.H., Extramural</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2015</Year>
<Month>06</Month>
<Day>17</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>United States</Country>
<MedlineTA>Emerg Microbes Infect</MedlineTA>
<NlmUniqueID>101594885</NlmUniqueID>
<ISSNLinking>2222-1751</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000416" MajorTopicYN="N">Alberta</DescriptorName>
<QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000829" MajorTopicYN="N">Animals, Domestic</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000835" MajorTopicYN="N">Animals, Wild</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D046090" MajorTopicYN="N">Anseriformes</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001715" MajorTopicYN="N">Bird Diseases</DescriptorName>
<QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001717" MajorTopicYN="N">Birds</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D046091" MajorTopicYN="N">Charadriiformes</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D003691" MajorTopicYN="N">Delaware</DescriptorName>
<QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004196" MajorTopicYN="N">Disease Outbreaks</DescriptorName>
<QualifierName UI="Q000662" MajorTopicYN="Y">veterinary</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D004372" MajorTopicYN="N">Ducks</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D062665" MajorTopicYN="N">Epidemiological Monitoring</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D057920" MajorTopicYN="N">Influenza A Virus, H7N3 Subtype</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005585" MajorTopicYN="N">Influenza in Birds</DescriptorName>
<QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D011201" MajorTopicYN="N">Poultry Diseases</DescriptorName>
<QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year>
<Month>03</Month>
<Day>13</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="revised"><Year>2015</Year>
<Month>05</Month>
<Day>11</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2015</Year>
<Month>05</Month>
<Day>13</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2016</Year>
<Month>3</Month>
<Day>9</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2015</Year>
<Month>1</Month>
<Day>1</Day>
<Hour>0</Hour>
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<PubMedPubDate PubStatus="medline"><Year>2017</Year>
<Month>4</Month>
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<PublicationStatus>epublish</PublicationStatus>
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<ArticleId IdType="doi">10.1038/emi.2015.35</ArticleId>
<ArticleId IdType="pmc">PMC4773044</ArticleId>
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<affiliations><list><country><li>Canada</li>
<li>États-Unis</li>
</country>
<region><li>Maryland</li>
<li>New Jersey</li>
<li>Tennessee</li>
</region>
<settlement><li>College Park (Maryland)</li>
</settlement>
<orgName><li>Université du Maryland</li>
</orgName>
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<tree><country name="États-Unis"><region name="Tennessee"><name sortKey="Krauss, Scott" sort="Krauss, Scott" uniqKey="Krauss S" first="Scott" last="Krauss">Scott Krauss</name>
</region>
<name sortKey="Danner, Angela" sort="Danner, Angela" uniqKey="Danner A" first="Angela" last="Danner">Angela Danner</name>
<name sortKey="Das, Suman R" sort="Das, Suman R" uniqKey="Das S" first="Suman R" last="Das">Suman R. Das</name>
<name sortKey="Dey, Amanda D" sort="Dey, Amanda D" uniqKey="Dey A" first="Amanda D" last="Dey">Amanda D. Dey</name>
<name sortKey="Friedman, Kimberly" sort="Friedman, Kimberly" uniqKey="Friedman K" first="Kimberly" last="Friedman">Kimberly Friedman</name>
<name sortKey="Kayali, Ghazi" sort="Kayali, Ghazi" uniqKey="Kayali G" first="Ghazi" last="Kayali">Ghazi Kayali</name>
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<name sortKey="Schobel, Seth A" sort="Schobel, Seth A" uniqKey="Schobel S" first="Seth A" last="Schobel">Seth A. Schobel</name>
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   |texte=   Long-term surveillance of H7 influenza viruses in American wild aquatic birds: are the H7N3 influenza viruses in wild birds the precursors of highly pathogenic strains in domestic poultry?
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Long-term surveillance of H7 influenza viruses in American wild aquatic birds: are the H7N3 influenza viruses in wild birds the precursors of highly pathogenic strains in domestic poultry?

Long-term surveillance of H7 influenza viruses in American wild aquatic birds: are the H7N3 influenza viruses in wild birds the precursors of highly pathogenic strains in domestic poultry?

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